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Fig. 2 | BMC Biochemistry

Fig. 2

From: Effects of protonation on the hydrolysis of triphosphate in vacuum and the implications for catalysis by nucleotide hydrolyzing enzymes

Fig. 2

Reactant state structure of triphosphate. a ATP bound to myosin (based on the 1VOM crystal structure). Only the triphosphate moiety (labeled α,β,γ) of ATP is depicted. Two water molecules that coordinate Mg2+ are not shown. Thin dotted lines show hydrogen bonds shorter than 2.8 Å between the heavy atoms. b Methyl triphosphate (β- and γ-protonated), after energy minimization in vacuum. The Mg2+ hexa-coordination is depicted with dotted lines. c First step of the sequential mechanism: breaking of the Pγ–Oβγ bond to form a stable PγO3 metaphosphate. d Second step of the sequential mechanism: lysis of water Wa and simultaneous attack of the metaphosphate

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