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Figure 3 | BMC Biochemistry

Figure 3

From: The "Transport Specificity Ratio": a structure-function tool to search the protein fold for loci that control transition state stability in membrane transport catalysis

Figure 3

Results from TSR analysis are valid across a broad range of reaction times E. coli strain SK11 (GabP-positive) was exposed simultaneously to 6 μM [3H]NA (0.42 Ci/ml) and 4 μM [14C]GABA (0.06 Ci/ml) for the indicated times at 30°C. Parallel experiments were carried out in the presence of 2 mM GABA, which was included to block the GabP. Panel A shows the GabP-dependent component of competitive uptake (difference between the parallel experiments) over a 10-fold time range. The red arrow indicates a probable mechanical error, causing low uptake inconsistent with other points on the curve. The Panel B shows the GABA to NA mole ratio (left-side ordinate) calculated from data shown in the Panel A. The associated TSR values may be read from the right-side ordinate. The red arrow has the same meaning as in the Panel A, and serves here to emphasize the reliability of the TSR analysis, which has self-correcting properties that compensate for many routine sample processing problems that may cause inconsistency in times or volumes (see discussion).

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