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Table 5 Comparison of the Site I and II ligand-binding domains within each IRBP module

From: Module structure of interphotoreceptor retinoid-binding protein (IRBP) may provide bases for its complex role in the visual cycle – structure/function study of Xenopus IRBP

Amino acid residues lining the two domains:

 

Site I

Site II

X1:

W132

Y162

V97

I111

L127

I131

L109

W268

P63

S271

G236

Y73

T240

L238

X2:

W135

Y165

F100

F114

I130

V134

L112

W272

P62

G275

N241

L73

S245

M243

X3:

W133

Y163

F98

F112

L128

V132

L110

W271

H63

S274

V239

E75

V243

L241

X4:

W127

Y157

F92

F106

L122

V126

I104

W265

F55

L268

L233

S66

P237

H235

Amino acid residues that are significantly different and/or interfering with ligand-binding:

 

Site I

 

Site II

     

X1:

V159

M191

E189

E121

L187

 

Y73

P76

     

X2:

L162

L196

K194

A124

H192

 

L73

P76

     

X3:

F160

F194

E192

K122

L190

 

E75

L77

     

X4:

F154

V188

D186

N116

L184

 

S66

R69