Table 7 Accuracy of prediction for the carboxyl sites. The accuracy was tested to the <2 to <0.5 ranges. The individual accuracy of the residues is given in the bottom two tables. Figures marked in bold indicate the greatest accuracy.
TOTAL (242) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
|---|---|---|---|---|---|---|---|---|---|---|
| Â | AMBER | Â | PARSE | Â | MCCE | Â | UHBD | Â | PROPKA | Â |
| Â | Â | % | Â | % | Â | % | Â | % | Â | % |
<2 | 26 | 66.67 | 20 | 51.28 | 30 | 76.92 | 30 | 76.92 | 34 | 87.18 |
<1.5 | 19 | 48.72 | 15 | 38.46 | 25 | 64.10 | 20 | 51.28 | 32 | 82.05 |
<1 | 10 | 25.64 | 10 | 25.64 | 17 | 43.59 | 8 | 20.51 | 26 | 66.67 |
<0.5 | 6 | 15.38 | 4 | 10.26 | 8 | 20.51 | 3 | 7.69 | 14 | 35.90 |
SURFACE (209) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
| Â | AMBER | Â | PARSE | Â | MCCE | Â | UHBD | Â | PROPKA | Â |
| Â | Â | % | Â | % | Â | % | Â | % | Â | % |
<2 | 17 | 62.96 | 13 | 48.15 | 10 | 70.37 | 19 | 70.37 | 22 | 81.48 |
<1.5 | 10 | 37.04 | 8 | 29.63 | 16 | 59.26 | 11 | 40.74 | 20 | 74.07 |
<1 | 4 | 14.81 | 4 | 14.81 | 12 | 44.44 | 2 | 7.41 | 16 | 59.26 |
<0.5 | 2 | 7.41 | 1 | 3.70 | 5 | 18.52 | 0 | 0.00 | 10 | 37.04 |
BURIED (33) | Â | Â | Â | Â | Â | Â | Â | Â | Â | Â |
| Â | AMBER | Â | PARSE | Â | MCCE | Â | UHBD | Â | PROPKA | Â |
| Â | Â | % | Â | % | Â | % | Â | % | Â | % |
<2 | 9 | 75.00 | 9 | 75.00 | 11 | 91.67 | 11 | 91.67 | 12 | 100.00 |
<1.5 | 9 | 75.00 | 7 | 58.33 | 9 | 75.00 | 9 | 75.00 | 12 | 100.00 |
<1 | 6 | 50.00 | 6 | 50.00 | 5 | 41.67 | 6 | 50.00 | 10 | 83.33 |
<0.5 | 4 | 33.00 | 3 | 25.00 | 3 | 25.00 | 3 | 25.00 | 4 | 33.33 |