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Table 3

From: Gene expression profile of HIV-1 Tat expressing cells: a close interplay between proliferative and differentiation signals

Ratio (C3/C5)

Gene ID

Signal Transduction

 

up

8.82

ras-related small GTP binding protein Rab5 (rab5). [Acc# U18420]

down

0.29

MAP kinase-activating death domain protein (MADD). [Acc# U77352]

0.27

MAP kinase kinase kinase (MTK1). [Acc# AF002715]

0.19

p38 gamma MAP kinase. [Acc# U66243]

0.18

ERK3 protein kinase. [Acc# L77964]

0.14

ERK1 mRNA for protein serine/threonine kinase. [Acc# X60188]

0.14

mRNA for TRAF5. [Acc# AB000509]

Thymosin

 

up

5.16

Thymosin beta-10. [Acc# S54005]

5.09

Prothymosin alpha mRNA (ProT-alpha). [Acc# M26708]

4.38

Thymosin beta-10. [Acc# M20259]

4.15

m-RNA for NB Thymosin beta. [Acc# D82345]

4.1

Parathymosin. [Acc# M24398]

3.54

Thymosin beta-4. [Acc# M17733]

2.73

Prothymosin alpha. [Acc# M14630]

Cell Cycle

 

up

9.62

Cyclin protein gene. [Acc# M15796]

8.88

14-3-3 epsilon. [Acc# U54778]

8.04

mRNA for proliferation-associated gene (pag). [Acc# X67951]

7.8

poly(ADP-ribose) polymerase. [Acc# M18112]

7.46

p18 protein. [Acc# J04991]

6.46

hCDC37 homolog, [Acc# U43077]

5.12

hCDC10, CDC10 homolog. [Acc# S72008]

2.39

hCDC2, [Acc# X05360]

down

0.24

mRNA for putative serine/threonine protein kinase. [Acc# Y10032]

0.22

Cam Kinase I. [Acc# L41816]

0.2

Checkpoint suppressor 1 [Acc# U68723]

0.16

PLSTIRE for serine/threonine protein kinase. [Acc# X66365]

0.15

PCTAIRE-2 for serine/threonine protein kinase. [Acc# X66360]

DNA Repair/Replication

 

up

9.62

PCNA [Acc# M15796]

7.8

poly(ADP-ribose) polymerase. [Acc# M18112]

3.85

Lupus p70 (Ku) autoantigen protein. [Acc# J04611]

2.56

Excision repair protein (ERCC1). [Acc# M13194]

3.1

DNA-PKcs [Acc# U34994]

down

0.25

Rad51C (RAD51C). [Acc# AF029669]

0.23

DNA repair protein XRCC9 (XRCC9). [Acc# U70310]

0.21

DNA mismatch repair protein homolog (hMLH1). [Acc# U07343]

0.19

Topoisomerase I. [Acc# J03250]

0.18

RAD51D. [Acc# AF034956]

0.13

DNA replication licensing factor (huMCM2). [Acc# D83987]

Transcription

 

Pol I

 

up

3.19

Transcription factor SL1. [Acc# L39059]

Pol II

 

up

7.17

100 kDa coactivator. [Acc# U22055]

6.42

RNA polymerase II elongation factor-like protein. [Acc# Z47087]

3.34

TFIID subunit TAFII55 (TAFII55). [Acc# U18062]

3.1

mRNA for TBP associated factor, TAFII68. [Acc# X98893]

down

 

0.3

TFIIB related factor hBRF (HBRF). [Acc# U75276]

0.29

mRNA for transcriptional activator hSNF2b. [Acc# D26156]

0.27

mRNA for RNA polymerase II 140 kDa subunit. [Acc# X63563]

0.25

RNA polymerase II. [Acc# L37127]

0.22

p300 protein. [Acc# U01877]

0.16

Rac3 (RAC3). [Acc# AF008591]

0.14

RNA polymerase II elongation factor SIII. [Acc# L34587]

Pol III

 

down

0.13

TFIIIC Box B-binding subunit. [Acc# U02619]

0.12

Transcription factor TFIIIB (hTFIIIB90). [Acc# U28838]

Chromatin Remodeling

 

up

4.93

NAP (nucleosome assembly protein). [Acc# M86667]

4.83

RNA polymerase transcriptional mediator (h-MED6). [Acc# U78082]

4.39

sin3 associated polypeptide p18 (SAP18). [Acc# U96915]

3.81

mRNA for nucleosome assembly protein. [Acc# D50370]

down

0.21

SWI/SNF complex 170 KDa subunit (BAF170). [Acc# U66616]

0.21

Chromatin assembly factor-I p150 subunit. [Acc# U20979]

0.19

SWI/SNF complex 60 KDa subunit (BAF60c). [Acc# U66619]

DNA Binding

 

up

10.17

mRNA for DNA binding protein TAXREB67. [Acc# D90209]

5.76

Pur (pur-alpha). [Acc# M96684]

5.25

Nuclear factor NF45. [Acc# U10323]

5.28

mRNA for transcription factor AREB6. [Acc# D15050]

7.17

Insulin-like growth factor binding protein 2 (IGFBP2). [Acc# M35410]

6.33

Non-histone chromosomal protein HMG-17. [Acc# M12623]

down

0.27

Kruppel related zinc finger protein (HTF10). [Acc# L11672]

0.26

Transcription factor ETR101. [Acc# M62831]

0.21

Helix-loop-helix protein (Id-2). [Acc# M97796]

0.2

Transcription factor IL-4 Stat. [Acc# U16031]

0.2

Activating transcription factor 3 (ATF3). [Acc# L19871]

0.16

ATF family member ATF6 (ATF6). [Acc# AF005887]

0.16

Paired box gene (PAX6) homologue. [Acc# M93650]

0.17

MADS/MEF2-family transcription factor (MEF2C). [Acc# L08895]