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Table 2 The rate constants and the binding free energy changes estimated from the kinetic modeling calculation.

From: Novel β-N-acetylglucosaminidases from Vibrio harveyi 650: Cloning, expression, enzymatic properties, and subsite identification

Substrate

Rate constant (s -1 )

Binding free energy ( k cal mol-1)

 

k +1

k -1

k +2

(-2)

(-1)

(+1)

(+2)

(+3)

(+4)

GlcNAc4-6

0.07-0.1

0.0

50.0

+7.0

-4.5

0.0

-1.1

-0.1

+0.9

  1. The optimization was based on the experimental time-course of hexamer hydrolysis catalyzed VhNag2 (upper panels of Fig. 6).