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Table 2 Parameter estimates for the tree

From: Exploring laccase-like multicopper oxidase genes from the ascomycete Trichoderma reesei: a functional, phylogenetic and evolutionary study

Model

p

l

Parameter estimates

Positively-selected sites

M0: one-ratio

1

-5974.07

ω = 0.0621

None

Branch-site model:

    

Model A

3

-5925.68

p0 = 0.503, p1 = 0.102

Site for foreground lineage:

   

(p2 + p3 ) = 0.393

100P 102F 115L 131S 137Y 138C 158Y 223S 279W 339E 349L 368P

   

ω2 = 14.2

379G 388P 393F 455N

    

(at P > 0.9)

  1. Note: p is the number of free parameters for the ω ratios. Parameters indicating positive selection are presented in boldtype. Sites potentially under positive selection were identified using laccase from P. cinnabarinus (AAF13052) according to Bayes Empirical Bayes analysis of Model A.