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Table 3 Structure of N-linked carbohydrates in bovine TAFI

From: Biochemical characterization of bovine plasma thrombin-activatable fibrinolysis inhibitor (TAFI)

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N-Glycans/Occupancy**

Observed glycopeptide mass (Da)

Theoretical glycopeptide mass (Da)

Glycan mass (Da)

Glycans***

N 22

Yes/100%

3157.2

3157.4

1622.6

Gal2Man3GlcNAc4

  

3448.3

3448.5

1913.7

Neu5Ac1Gal2Man3GlcNAc4

  

3464.3

3464.5

1929.7

Neu5Gc1Gal2Man3GlcNAc4

  

3739.5

3739.6

2204.8

Neu5Ac2Gal2Man3GlcNAc4

  

3755.5

3755.6

2220.8

Neu5Gc1Neu5Ac1Gal2Man3GlcNAc4

  

4030.6

4030.7

2495.9

Neu5Ac3Gal2Man3GlcNAc4

  

4046.7

4046.7

2511.9

Neu5Gc1Neu5Ac2Gal2Man3GlcNAc4

  

4062.6

4062.7

2527.9

Neu5Gc2Neu5Ac1Gal2Man3GlcNAc4

  

4321.8

4321.8

2787.0

Neu5Ac4Gal2Man3GlcNAc4

  

4337.8

4337.8

2803.0

Neu5Gc1Neu5Ac3Gal2Man3GlcNAc4

  

4353.8

4353.8

2819.0

Neu5Gc2Neu5Ac2Gal2Man3GlcNAc4

N 51

Yes/100%

3533.6

3533.5

1622.6

Gal2Man3GlcNAc4

  

3824.7

3824.6

1913.7

Neu5Ac1Gal2Man3GlcNAc4

  

3840.7

3840.6

1929.7

Neu5Gc1Gal2Man3GlcNAc4

  

4115.9

4115.7

2204.8

Neu5Ac2Gal2Man3GlcNAc4

  

4131.9

4131.7

2220.8

Neu5Gc1Neu5Ac1Gal2Man3GlcNAc4

  

4407.1

4406.8

2495.9

Neu5Ac3Gal2Man3GlcNAc4

  

4423.1

4422.8

2511.9

Neu5Gc1Neu5Ac2Gal2Man3GlcNAc4

  

4439.1

4438.8

2527.9

Neu5Gc2Neu5Ac1Gal2Man3GlcNAc4

N 63

Yes/100%

2389.9

2390.0

1622.6

Gal2Man3GlcNAc4

  

2681.0

2681.1

1913.7

Neu5Ac1Gal2Man3GlcNAc4

  

2697.0

2697.1

1929.7

Neu5Gc1Gal2Man3GlcNAc4

  

2972.1

2972.2

2204.8

Neu5Ac2Gal2Man3GlcNAc4

  

2988.0

2988.2

2220.8

Neu5Gc1Neu5Ac1Gal2Man3GlcNAc4

  

3263.3

3263.3

2495.9

Neu5Ac3Gal2Man3GlcNAc4

  

3279.2

3279.3

2511.9

Neu5Gc1Neu5Ac2Gal2Man3GlcNAc4

  

3295.3

3295.3

2527.9

Neu5Gc2Neu5Ac1Gal2Man3GlcNAc4

N 86

Yes/100%

2851.0

2851.2*

1622.6

Gal2Man3GlcNAc4

  

3142.1

3142.3*

1913.7

Neu5Ac1Gal2Man3GlcNAc4

  

3158.1

3158.3*

1929.7

Neu5Gc1Gal2Man3GlcNAc4

  

3433.2

3433.4*

2204.8

Neu5Ac2Gal2Man3GlcNAc4

  

3449.2

3449.4*

2220.8

Neu5Gc1Neu5Ac1Gal2Man3GlcNAc4

  

3724.3

3724.5*

2495.9

Neu5Ac3Gal2Man3GlcNAc4

  

3740.4

3740.5*

2511.9

Neu5Gc1Neu5Ac2Gal2Man3GlcNAc4

  

3756.4

3756.5*

2527.9

Neu5Gc2Neu5Ac1Gal2Man3GlcNAc4

N 219

unglycosylated

    

N 226

unglycosylated

    
  1. *Theoretical glycopeptide mass values are based on the transformation of the N-terminal Gln82 to pyroglutamic acid.
  2. **Percent occupancy of N-glycans was determined based on MS experiments in which peptide mass fingerprints of tryptic bovine TAFI treated ± PNGase F were compared to establish the presence of (non/de)-glycosylated peptides (data not shown).
  3. ***GlcNAc, N-acetylglucosamine; Man, mannose; Gal, galactose; Neu5Ac, 5-N-acetylneuraminic acid; Neu5Gc, 5-N-glycolylneuraminic acid.