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Table 1 IT MS3 fragmentation patterns of selected metabolites, occurring in the analyzed cell culture supernatants.

From: Metabolic signature of breast cancer cell line MCF-7: profiling of modified nucleosides via LC-IT MS coupling

compound name

MS

MS2†

MS3

1-ribosylimidazole-4-acetic acid

259

127 (MH+-R)

81 (127-HCOOH)

1-ribosylnicotinamide

255

123 (MH+-R)

106 (123-NH3)

   

96 (123-HCN)

   

80 (123-HNCO)

S-adenosylmethionine

399

136 (MH+-mR)

119 (136-NH3)

   

109 (136-HCN)

   

94 (136-NH2CN)

5-carbamoylmethyluridine

302

170 (MH+-R)

153 (170-NH3)

1-ribosyl-4-carboxamido-5-aminoimidazole

259

127 (MH+-R)

110 (127-NH3)

S-adenosylhomocysteine

385

136 (MH+-mR)

119(136-NH3)

   

109(136-HCN)

   

94 (136-NH2CN)

5'-deoxy-5'-methyl-thioadenosine sulfoxide

314

136 (MH+-mR)

119(136-NH3)

   

109(136-HCN)

   

94(136-NH2CN)

5'-deoxyadenosine

252

136 (MH+-mR)

119 (136-NH3)

   

109 (136-HCN)

   

94 (136-NH2CN)

5-methoxycarbonylmethyl-2-thiouridine

333

201 (MH+-R)

169 (201-CH3OH)

   

141 (201-CH3OCHO)

N6-methyl-N6-threonylcarbamoyladenosine

427

295 (MH+-R)

150 (295-C5H7NO4)

2-methylthio-N6-threonylcarbamoyladenosine

459

327 (MH+-R)

208 (327-C4H9NO3)

   

182 (327-C5H7NO4)

  1. † R: loss of ribose (132 amu), mR: loss of modified ribose